Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs3135076 chr4:2402434 A/G 0 172 0.4 16.37 15.37 KM Plot
PAAD rs3135077 chr4:2401747 A/G 0 178 0.4 16.1 15.37 KM Plot
PAAD rs3135078 chr4:2399928 A/G 0 177 0.4 16.13 15.37 KM Plot
PAAD rs3135088 chr4:2392274 A/G 0 178 0.4 16.13 15.4 KM Plot
PAAD rs3136545 chr11:68460738 C/T 9.47E-10 177 15.57 14.02 2.2 KM Plot
PAAD rs33811 chr5:94621783 A/G 1.02E-7 178 15.33 16.28 4.05 KM Plot
PAAD rs34008252 chr5:72636329 CA/C 1.78E-9 175 15.62 14.23 2.2 KM Plot
PAAD rs34037218 chr3:39087394 C/T 0.000149 178 15.27 16.37 7.47 KM Plot
PAAD rs34053568 chr7:102701812 T/C 6.7E-8 178 16.17 12.2 3.43 KM Plot
PAAD rs34091509 chr11:67405763 TA/T 2.07E-5 175 15.43 15.67 7.77 KM Plot
PAAD rs34193635 chr2:178986962 G/GT 2.55E-12 171 15.62 15.1 2.2 KM Plot
PAAD rs34235442 chr1:16312023 AT/A 2.03E-6 176 3.43 14 15.62 KM Plot
PAAD rs34291514 chr17:1058299 G/A 5.31E-5 170 15.42 17.4 4 KM Plot
PAAD rs34340941 chr5:94607169 G/GA 1.95E-8 175 2.15 17.5 14.18 KM Plot
PAAD rs34367325 chr21:48059581 T/TA 5.43E-5 175 15.37 15.62 7.47 KM Plot